8 February 2019
The "ab initio 3D modeling" based on the high precision of our secondary structure prediction algorithm
The predicted structures well reproduced the corresponding crystal structures (refer to the results of the protein superposition). In particular, our algorithm precisely predicted both a loop structure and a random coil structure. Consequently, the secondary structure parts (helices and sheets) are coordinated to a suitable orientation, thus giving a well-reproduced whole structure.
Novel secondary structure prediction algorithm based on the f and y values of main chain atoms
This algorithm shows the high precision in the known algorithms (e.g., Chou-Fasman and neural network algorithms, etc.).
Reported at November 2002.
The Homology Modeling Professional module program in Homology Modeling Professional for HyperChem software carries this secondary structure prediction algorithm and the ab initio 3D modeling algorithm.